VU Gyvybės mokslų centro autoriaus 'Arūnas Šilanskas' publikacijų sąrašas

2024
1 Manakova, Elena; Golovinas, Edvardas; Pocevičiūtė, Reda; Sasnauskas, Giedrius; Šilanskas, Arūnas; Rutkauskas, Danielis; Jankunec, Marija; Zagorskaitė, Evelina; Jurgelaitis, Edvinas; Grybauskas, Algirdas; Venclovas, Česlovas; Zaremba, Mindaugas. The missing part: the Archaeoglobus fulgidus Argonaute forms a functional heterodimer with an N-L1-L2 domain protein // Nucleic acids research. Oxford : Oxford University Press (OUP). ISSN 0305-1048. eISSN 1362-4962. 2024, vol. 52, iss. 5, p. 2530-2545. DOI: 10.1093/nar/gkad1241. [DB: Science Citation Index Expanded (Web of Science), Embase]
2 Bigelytė, Greta; Duchovska, Brigita; Žedaveinytė, Rimantė; Sasnauskas, Giedrius; Šinkūnas, Tomas; Dalgėdienė, Indrė; Tamulaitienė, Giedrė; Šilanskas, Arūnas; Kazlauskas, Darius; Valančauskas, Lukas; Madariaga-Marcos, Julene; Seidel, Ralf; Šikšnys, Virginijus; Karvelis, Tautvydas. Innate programmable DNA binding by CRISPR-Cas12m effectors enable efficient base editing // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2024, vol. 52, iss. 6, p. 3234-3248. DOI: 10.1093/nar/gkae016. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2023
1 Sasnauskas, Giedrius; Tamulaitienė, Giedrė; Druteika, Gytis; Carabias, Arturo; Šilanskas, Arūnas; Kazlauskas, Darius; Venclovas, Česlovas; Montoya, Guillermo; Karvelis, Tautvydas; Šikšnys, Virginijus. TnpB structure reveals minimal functional core of Cas12 nuclease family // Nature. Berlin : Nature Portfolio. ISSN 0028-0836. eISSN 1476-4687. 2023, vol. 616, no. 7956, p. 384-389. DOI: 10.1038/s41586-023-05826-x. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Ivanovaitė, Šarūnė; Paksaitė, Justė; Kopūstas, Aurimas; Karzaitė, Giedrė; Rutkauskas, Danielis; Šilanskas, Arūnas; Sasnauskas, Giedrius; Zaremba, Mindaugas; Jones, Stephen K.; Tutkus, Marijonas. smFRET detection of cis and trans DNA interactions by the BfiI restriction endonuclease // Journal of physical chemistry B. Washington : American Chemical Society (ACS). ISSN 1520-6106. eISSN 1520-5207. 2023, vol. 127, no. 29, p. 6470-6478. DOI: 10.1021/acs.jpcb.3c03269.s001. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2022
1 Zaremba, Mindaugas; Dakinevičienė, Donata; Golovinas, Edvardas; Zagorskaitė, Evelina; Stankūnas, Edvinas; Lopatina, Anna; Sorek, Rotem; Manakova, Elena; Rukšėnaitė, Audronė; Šilanskas, Arūnas; Ašmontas, Simonas Vytautas; Grybauskas, Algirdas; Tylenytė, Ugnė; Jurgelaitis, Edvinas; Grigaitis, Rokas; Timinskas, Kęstutis; Venclovas, Česlovas; Šikšnys, Virginijus. Short prokaryotic Argonautes provide defence against incoming mobile genetic elements through NAD+ depletion // Nature microbiology. Berlin : Nature Portfolio. eISSN 2058-5276. 2022, vol. 7, iss. 11, p. 1857-1869. DOI: 10.1038/s41564-022-01239-0. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Sabonis, Džiugas; Šilanskas, Arūnas; Ofir, G.; Sorek, R.; Šikšnys, Virginijus; Zaremba, Mindaugas; Tamulaitienė, Giedrė. Crystal structures of TIR-domain proteins from Thoeris bacterial antiviral system // Febs Open Bio: Supplement: The Biochemistry Global Summit, 25th IUBMB Congress, 46th FEBS Congress, 15th PABMB Congress, July 9–14, 2022, Lisbon, Portugal. Hoboken : Wiley. ISSN 2211-5463. 2022, vol. 12, suppl. 1, art. no. P-02.1-021, p. 162-163. DOI: 10.1002/2211-5463.13440. [DB: Science Citation Index Expanded (Web of Science)] [IF: 2.600; AIF: 5.900; Q4 (2022 InCities JCR SCIE)]

2021
1 Golovinas, Edvardas; Rutkauskas, Danielis; Manakova, Elena; Jankunec, Marija; Šilanskas, Arūnas; Sasnauskas, Giedrius; Zaremba, Mindaugas. Prokaryotic Argonaute from Archaeoglobus fulgidus interacts with DNA as a homodimer // Scientific reports. London : Nature. ISSN 2045-2322. 2021, vol. 11, art. no. 4518, p. 1-14. DOI: 10.1038/s41598-021-83889-4. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE, DOAJ] [IF: 4.997; AIF: 7.694; Q2 (2021 InCities JCR SCIE)]
2 Bigelytė, Greta; Young, Joshua K; Karvelis, Tautvydas; Budrė, Karolina; Žedaveinytė, Rimantė; Djukanovic, Vesna; Van Ginkel, Elizabeth; Paulraj, Sushmitha; Gasior, Stephen; Jones, Spencer; Feigenbutz, Lanie; Clair, Grace St; Barone, Pierluigi; Bohn, Jennifer; Acharya, Ananta; Zastrow-Hayes, Gina; Henkel-Heinecke, Selgar; Šilanskas, Arūnas; Seidel, Ralf; Šikšnys, Virginijus. Miniature type V-F CRISPR-Cas nucleases enable targeted DNA modification in cells // Nature communications. Berlin : Nature research. eISSN 2041-1723. 2021, vol. 12, iss. 1, art. no. 6191, p. [1-8]. DOI: 10.1038/s41467-021-26469-4. [DB: Science Citation Index Expanded (Web of Science), Scopus, PubMed]
3 Karvelis, Tautvydas; Druteika, Gytis; Bigelytė, Greta; Budrė, Karolina; Žedaveinytė, Rimantė; Šilanskas, Arūnas; Kazlauskas, Darius; Venclovas, Česlovas; Šikšnys, Virginijus. Transposon-associated TnpB is a programmable RNA-guided DNA endonuclease // Nature. Berlin : Nature research. ISSN 0028-0836. eISSN 1476-4687. 2021, vol. 599, p. 692-696. DOI: 10.1038/s41586-021-04058-1. [DB: Science Citation Index Expanded (Web of Science), Scopus, Academic Search Premier, MEDLINE, Embase] [IF: 69.504; AIF: 7.694; Q1 (2021 InCities JCR SCIE)]

2020
1 Karvelis, Tautvydas; Bigelytė, Greta; Young, Joshua K; Hou, Zhenglin; Žedaveinytė, Rimantė; Budrė, Karolina; Paulraj, Sushmitha; Djukanovic, Vesna; Gasior, Stephen; Šilanskas, Arūnas; Venclovas, Česlovas; Šikšnys, Virginijus. PAM recognition by miniature CRISPR-Cas12f nucleases triggers programmable double-stranded DNA target cleavage // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2020, vol. 48, iss. 9, p. 5016-5023. DOI: 10.1093/nar/gkaa208. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 16.971; AIF: 5.817; Q1 (2020 InCities JCR SCIE)]

2019
1 Wilkinson, Martin; Drabavičius, Gediminas; Šilanskas, Arūnas; Gasiūnas, Giedrius; Šikšnys, Virginijus; Wigley, Dale B. Structure of the DNA-bound spacer capture complex of a type II CRISPR-Cas system // Molecular cell. Cambridge, MA : Cell Press. ISSN 1097-2765. eISSN 1097-4164. 2019, vol. 75, iss. 1, p. 90-101. DOI: 10.1016/j.molcel.2019.04.020. [DB: MEDLINE, Embase, BIOSIS Previews, ScienceDirect, Science Citation Index Expanded (Web of Science), Scopus] [IF: 15.584; AIF: 5.487; Q1 (2019 InCities JCR SCIE)]

2018
1 Bigelytė, Greta; Karvelis, Tautvydas; Gasiūnas, Giedrius; Young, Joshua K.; Šilanskas, Arūnas; Cigan, Mark; Šikšnys, Virginijus. A rapid method for the identification of protospacer adjacent motifs and guide RNAs for novel Cas9 orthologs // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 27. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-19].
2 Toliušis, Paulius; Tamulaitienė, Giedrė; Grigaitis, Rokas; Tuminauskaitė, Donata; Šilanskas, Arūnas; Manakova, Elena; Venclovas, Česlovas; Szczelkun, Mark D.; Šikšnys, Virginijus; Zaremba, Mindaugas. The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 51. Prieiga per internetą: <http://eia.libis.lt/item.php?item=vita_scientia:_confe_2018_00_00.pdf&type=date> [žiūrėta 2018-04-27].
3 Tuminauskaitė, Donata; Tamulaitienė, Giedrė; Šilanskas, Arūnas; Zaremba, Mindaugas; Toliušis, Paulius. Crystallographic studies of atypical restriction endonuclease CglI H-protein // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 55-56. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-27].
4 Drabavičius, Gediminas; Šilanskas, Arūnas; Šinkūnas, Tomas; Gasiūnas, Giedrius. Proofreading domain facilitates spacer integration in CRISPR-Cas - an adaptive prokaryotic immunity // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 56-57. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-27].
5 Drabavičius, Gediminas; Šinkūnas, Tomas; Šilanskas, Arūnas; Gasiūnas, Giedrius; Venclovas, Česlovas; Šikšnys, Virginijus. DnaQ exonuclease-like domain of Cas2 promotes spacer integration in a type I-E CRISPR-Cas system // EMBO reports. Hoboken : Wiley-VCH Verlag. ISSN 1469-221X. eISSN 1469-3178. 2018, vol. 19, no 7, art. no. e45543, p. 1709-1712. DOI: 10.15252/embr.201745543. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 8.383; AIF: 5.202; Q1 (2018 InCities JCR SCIE)]
6 Toliušis, Paulius; Tamulaitienė, Giedrė; Grigaitis, Rokas; Tuminauskaitė, Donata; Šilanskas, Arūnas; Manakova, Elena; Venclovas, Česlovas; Szczelkun, Mark D.; Šikšnys, Virginijus; Zaremba, Mindaugas. The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2018, vol. 46, no 5, p. 2560-2572. DOI: 10.1093/nar/gky107. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.147; AIF: 4.417; Q1 (2018 InCities JCR SCIE)]
7 Songailienė, Inga; Juozapaitytė, Ieva; Šinkūnas, Tomas; Juozapaitis, Jonas; Šulčius, S.; Šilanskas, Arūnas; Venclovas, Česlovas; Šikšnys, Virginijus. Melsvabakterių Aphanizomenon flos-aquae CRISPR-Cas sistemos tyrimai // Bioateitis: gamtos ir gyvybės mokslų perspektyvos : 11-oji jaunųjų mokslininkų konferencija, 2018 m. gruodžio 14 d.: pranešimų santraukos. Vilnius : Lietuvos mokslų akademijos leidykla. 2018, p. 12. Prieiga per internetą: <http://www.lma.lt/uploads/2017-12-07_BIOATEITIS_pranesimu_santraukos.pdf> [žiūrėta 2019-09-25].

2017
1 Drabavičius, Gediminas; Šilanskas, Arūnas; Šinkūnas, Tomas; Gasiūnas, Giedrius. Proofreading domain facilitates spacer integration in CRISPR-Cas - an adaptive prokaryotic immunity // Open Readings 2017 : 60th International conference for students of physics and natural sciences, March 14-17, 2017, Vilnius, Lithuania : programme and abstracts. Vilnius : Vilniaus universitetas. ISSN 2029-4425. 2017, p. 338. Prieiga per internetą: <http://www.openreadings.eu/wp-content/uploads/2017/03/OR2017_abstracts_book.pdf> [žiūrėta 2017-08-31].
2 Toliušis, Paulius; Zaremba, Mindaugas; Šilanskas, Arūnas; Szczelkun, Mark D.; Šikšnys, Virginijus. CgII cleaves DNA using a mechanism distinct from other ATP-dependent restriction endonucleases // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2017, Vol. 45, Iss. 14, p. 8435-8447. DOI: 10.1093/nar/gkx580. [DB: CABI Abstracts Databases, Chemical abstracts, Biobase, Embase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.561; AIF: 4.281; Q1 (2017 InCities JCR SCIE)]
3 Bigelytė, Greta; Šilanskas, Arūnas; Karvelis, Tautvydas; Gasiūnas, Giedrius. Naujų CRISPR-Cas9 baltymų PAM sekos charakterizavimas // Bioateitis: gamtos ir gyvybės mokslų perspektyvos : 10-oji jaunųjų mokslininkų konferencija, 2017 m. gruodžio 7 d.: pranešimų santraukos. Vilnius : Lietuvos mokslų akademijos leidykla. 2017, p. 21. Prieiga per internetą: <http://www.lma.lt/uploads/2017-12-07_BIOATEITIS_pranesimu_santraukos.pdf> [žiūrėta 2018-03-27].

2016
1 Karvelis, Tautvydas; Gasiūnas, Giedrius; Young, Joshua; Bigelytė, Greta; Šilanskas, Arūnas; Cigan, Mark; Šikšnys, Virginijus. Rapid characterization of CRISPR-Cas9 protospacer adjacent motif (PAM) sequence elements // XIVth International Conference of the Lithuanian Biochemical Society : the program and abstract book. Vilnius : Lithuanian Biochemical Society. 2016, p. 44. Prieiga per internetą: <https://cloudup.com/itEl9IF2n8q> [žiūrėta 2018-03-14].

2015
1 Karvelis, Tautvydas; Gasiūnas, Giedrius; Young, Joshua; Bigelytė, Greta; Šilanskas, Arūnas; Cigan, Mark; Šikšnys, Virginijus. Rapid characterization of CRISPR-Cas9 protospacer adjacent motif sequence elements // Genome biology. London : BioMed Central Ltd. ISSN 1465-6906. eISSN 1474-760X. 2015, vol. 16, art. no. 253, p. [1-13]. DOI: 10.1186/s13059-015-0818-7. [DB: Science Citation Index Expanded (Web of Science), BIOSIS Previews, Current Contents, Scopus, MEDLINE, CAB Abstracts] [IF: 11.313; AIF: 3.724; Q1 (2015 InCities JCR SCIE)]

2014
1 Toliušis, Paulius; Zaremba, Mindaugas; Šilanskas, Arūnas; Šikšnys, Virginijus. ATP-dependent endonuclease of a stress-sensitive restriction-modification system from Corynebacterium glutamicum // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 31. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-05-13].
2 Grigaitis, Rokas; Zaremba, Mindaugas; Šilanskas, Arūnas; Šikšnys, Virginijus. Characterisation of protein domains of atypical restriction-modification systems // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 59.
3 Tamulaitienė, Giedrė; Šilanskas, Arūnas; Gražulis, Saulius; Zaremba, Mindaugas; Šikšnys, Virginijus. Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, no 22, p. 14022-14030. DOI: 10.1093/nar/gku1237. [DB: Science Citation Index Expanded (Web of Science), CAB Abstracts, CSA (nenaudotinas), Ebsco (nenaudotinas), ProQuest (nenaudotinas), MEDLINE, VINITI] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
4 Zaremba, Mindaugas; Toliušis, Paulius; Grigaitis, Rokas; Manakova, Elena; Šilanskas, Arūnas; Tamulaitienė, Giedrė; Szczelkun, Mark. D.; Šikšnys, Virginijus. DNA cleavage by CgII and NgoAVII requires interaction between N- and R-proteins and extensive nucleotide hydrolysis // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, Vol. 42, no 22, p. 13887-13896. DOI: 10.1093/nar/gku1236. [DB: VINITI, MEDLINE, ProQuest (nenaudotinas), Elsevier (nenaudotinas), Ebsco (nenaudotinas), CSA (nenaudotinas), CAB Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]

2012
1 Šilanskas, Arūnas; Zaremba, Mindaugas; Sasnauskas, Giedrius; Šikšnys, Virginijus. Catalytic activity control of restriction endonuclease-triplex forming oligonucleotide conjugates // Bioconjugate chemistry. Washington : American Chemical Society. ISSN 1043-1802. 2012, vol. 23, iss. 2, p. 203-211. DOI: 10.1021/bc200480m. [DB: MEDLINE, Chemical abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 4.580; AIF: 3.933; Q1 (2012 InCities JCR SCIE)]
2 Tamulaitienė, Giedrė; Šilanskas, Arūnas; Šikšnys, Virginijus. Protein-protein interactions in phage T4 primosome // The FEBS Journal. Oxford : Wiley-Blackwell Publishing Ltd. ISSN 1742-464X. 2012, vol. 279, suppl. 1, p. 451. Prieiga per internetą: <http://onlinelibrary.wiley.com/doi/10.1111/j.1742-4658.2010.08705.x/pdf> [žiūrėta 2012-12-20]. [DB: Chemical abstracts, Index Medicus, Current Awareness in Biological Sciences, AgBiotech News and Information, Science Citation Index Expanded (Web of Science)] [IF: 4.250; AIF: 4.273; Q2 (2012 InCities JCR SCIE)]

2011
1 Šilanskas, Arūnas; Foss, Michael; Wende, Wolfgang; Urbanke, Claus; Lagunavičius, Arūnas; Pingoug, Alfred; Šikšnys, Virginijus. Photocaged variants of the MunI and PvuII restriction enzymes // Biochemistry. Washington : American Chemical Society. ISSN 0006-2960. 2011, vol. 50, no. 14, p. 2800-2807. DOI: 10.1021/bi2000609. [DB: AGRICOLA, Science Citation Index Expanded (Web of Science)] [IF: 3.422; AIF: 4.273; Q2 (2011 InCities JCR SCIE)]