VU Gyvybės mokslų centro autoriaus 'Darius Kazlauskas' publikacijų sąrašas

2024
1 Bigelytė, Greta; Duchovska, Brigita; Žedaveinytė, Rimantė; Sasnauskas, Giedrius; Šinkūnas, Tomas; Dalgėdienė, Indrė; Tamulaitienė, Giedrė; Šilanskas, Arūnas; Kazlauskas, Darius; Valančauskas, Lukas; Madariaga-Marcos, Julene; Seidel, Ralf; Šikšnys, Virginijus; Karvelis, Tautvydas. Innate programmable DNA binding by CRISPR-Cas12m effectors enable efficient base editing // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2024, vol. 52, iss. 6, p. 3234-3248. DOI: 10.1093/nar/gkae016. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2023
1 Sasnauskas, Giedrius; Tamulaitienė, Giedrė; Druteika, Gytis; Carabias, Arturo; Šilanskas, Arūnas; Kazlauskas, Darius; Venclovas, Česlovas; Montoya, Guillermo; Karvelis, Tautvydas; Šikšnys, Virginijus. TnpB structure reveals minimal functional core of Cas12 nuclease family // Nature. Berlin : Nature Portfolio. ISSN 0028-0836. eISSN 1476-4687. 2023, vol. 616, no. 7956, p. 384-389. DOI: 10.1038/s41586-023-05826-x. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2022
1 Neri, Uri; Wolf, Yuri I.; Roux, Simon; Camargo, Antonio Pedro; Lee, Benjamin; Kazlauskas, Darius; Chen, I. Min; Ivanova, Natalia; Zeigler Allen, Lisa; Paez-Espino, David; Bryant, Donald A.; Bhaya, Devaki; Narrowe, Adrienne B.; Probst, Alexander J.; Sczyrba, Alexander; Kohler, Annegret; Séguin, Armand; Shade, Ashley; Campbell, Barbara J.; Lindahl, Björn D.; Reese, Brandi Kiel; Roque, Breanna M.; DeRito, Chris; Averill, Colin; Cullen, Daniel; Beck, David A.C.; Walsh, David A.; Ward, David M.; Wu, Dongying; Eloe-Fadrosh, Emiley; Brodie, Eoin L.; Young, Erica B.; Lilleskov, Erik A.; Castillo, Federico J.; Martin, Francis M.; LeCleir, Gary R.; Attwood, Graeme T.; Cadillo-Quiroz, Hinsby; Simon, Holly M.; Hewson, Ian; Grigoriev, Igor V.; Tiedje, James M.; Jansson, Janet K.; Lee, Janey; VanderGheynst, Jean S.; Dangl, Jeff; Bowman, Jeff S.; Blanchard, Jeffrey L.; Bowen, Jennifer L.; Xu, Jiangbing; Banfield, Jillian F.; Deming, Jody W.; Kostka, Joel E.; Gladden, John M.; Rapp, Josephine Z.; Sharpe, Joshua; McMahon, Katherine D.; Treseder, Kathleen K.; Bidle, Kay D.; Wrighton, Kelly C.; Thamatrakoln, Kimberlee; Nusslein, Klaus; Meredith, Laura K.; Ramirez, Lucia; Buee, Marc; Huntemann, Marcel; Kalyuzhnaya, Marina G.; Waldrop, Mark P.; Sullivan, Matthew B.; Schrenk, Matthew O.; Hess, Matthias; Vega, Michael A.; O'Malley, Michelle A.; Medina, Monica; Gilbert, Naomi E.; Delherbe, Nathalie; Mason, Olivia U.; Dijkstra, Paul; Chuckran, Peter F.; Baldrian, Petr; Constant, Philippe; Stepanauskas, Ramunas; Daly, Rebecca A.; Lamendella, Regina; Gruninger, Robert J.; McKay, Robert M.; Hylander, Samuel; Lebeis, Sarah L.; Esser, Sarah P.; Acinas, Silvia G.; Wilhelm, Steven S.; Singer, Steven W.; Tringe, Susannah S.; Woyke, Tanja; Reddy, T. B.K.; Bell, Terrence H.; Mock, Thomas; McAllister, Tim; Thiel, Vera; Denef, Vincent J.; Liu, Wen-Tso; Martens-Habbena, Willm; Allen Liu, Xiao-Jun; Cooper, Zachary S.; Wang, Zhong; Krupovic, Mart; Dolja, Valerian V.; Kyrpides, Nikos C.; Koonin, Eugene V.; Gophna, Uri. Expansion of the global RNA virome reveals diverse clades of bacteriophages // Cell. Cambridge, MA : Cell Press. ISSN 0092-8674. eISSN 1097-4172. 2022, vol. 185, iss. 21, p. 4023-4037, e1-e18. DOI: 10.1016/j.cell.2022.08.023. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 64.500; AIF: 6.850; Q1 (2022 InCities JCR SCIE)]

2021
1 Šimoliūnienė, Monika; Kazlauskas, Darius; Zajančkauskaitė, Aurelija; Meškys, Rolandas; Truncaitė, Lidija. Escherichia coli trxA gene as a molecular marker for genome engineering of felixounoviruses // Biochimica et biophysica acta - general subjects. Amsterdam : Elsevier. ISSN 0304-4165. eISSN 1872-8006. 2021, vol. 1865, iss. 10, art. no. 129967, p. [1-8]. DOI: 10.1016/j.bbagen.2021.129967. [DB: Science Citation Index, Scopus, Current Contents, Embase, Index Chemicus] [IF: 4.117; AIF: 5.561; Q2 (2021 InCities JCR SCIE)]
2 Lechuga, Ana; Kazlauskas, Darius; Salas, Margarita; Redrejo-Rodríguez, Modesto. Unlimited cooperativity of betatectivirus SSB, a novel DNA binding protein related to an atypical group of SSBs from protein-primed replicating bacterial viruses // Frontiers in microbiology. Lausanne : Frontiers media SA. eISSN 1664-302X. 2021, vol. 12, art. no. 699140, p. [1-17]. DOI: 10.3389/fmicb.2021.699140. [DB: Science Citation Index Expanded (Web of Science), Scopus, PubMed]
3 Karvelis, Tautvydas; Druteika, Gytis; Bigelytė, Greta; Budrė, Karolina; Žedaveinytė, Rimantė; Šilanskas, Arūnas; Kazlauskas, Darius; Venclovas, Česlovas; Šikšnys, Virginijus. Transposon-associated TnpB is a programmable RNA-guided DNA endonuclease // Nature. Berlin : Nature research. ISSN 0028-0836. eISSN 1476-4687. 2021, vol. 599, p. 692-696. DOI: 10.1038/s41586-021-04058-1. [DB: Science Citation Index Expanded (Web of Science), Scopus, Academic Search Premier, MEDLINE, Embase] [IF: 69.504; AIF: 7.694; Q1 (2021 InCities JCR SCIE)]
4 Liu, Ying; Demina, Tatiana A; Roux, Simon; Aiewsakun, Pakorn; Kazlauskas, Darius; Simmonds, Peter; Prangishvili, David; Oksanen, Hanna M; Krupovic, Mart. Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes // PLoS biology. San Francisco, CA : Public Library of Science. ISSN 1544-9173. eISSN 1545-7885. 2021, vol. 19, iss. 11, art. no. e3001442, p. [1-26]. DOI: 10.1371/journal.pbio.3001442. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE, Academic Search Premier] [IF: 9.593; AIF: 5.700; Q1 (2021 InCities JCR SCIE)]
5 Šimoliūnienė, Monika; Žukauskienė, Emilija; Truncaitė, Lidija; Cui, Liang; Hutinet, Geoffrey; Kazlauskas, Darius; Kaupinis, Algirdas; Skapas, Martynas; de Crécy-Lagard, Valérie; Dedon, Peter; Valius, Mindaugas; Meškys, Rolandas; Šimoliūnas, Eugenijus. Pantoea bacteriophage vB_PagS_MED16 - a siphovirus containing a 2'-deoxy-7-amido-7-deazaguanosine-modified DNA // International journal of molecular sciences. Basel : MDPI. eISSN 1422-0067. 2021, vol. 22, iss. 14, art. no. 7333, p. [1-21]. DOI: 10.3390/ijms22147333. [DB: Science Citation Index Expanded (Web of Science), Scopus, Current Contents, PubMed]

2020
1 Krupovic, Mart; Varsani, Arvind; Kazlauskas, Darius; Breitbart, Mya; Delwart, Eric; Rosario, Karyna; Yutin, Natalya; Wolf, Yuri I; Harrach, Balázs; Zerbini, F Murilo; Dolja, Valerian V; Kuhn, Jens H; Koonin, Eugene V. Cressdnaviricota: a virus phylum unifying seven families of Rep-encoding viruses with single-stranded, circular DNA genomes // Journal of virology. Washington : American Society for Microbiology. ISSN 0022-538X. eISSN 1098-5514. 2020, vol. 94, iss. 12, art. no. e00582-20, p. [1-7]. DOI: 10.1128/JVI.00582-20. [DB: Biological Abstracts, BIOSIS Previews, MEDLINE, Science Citation Index Expanded (Web of Science), Scopus] [IF: 5.103; AIF: 4.611; Q1 (2020 InCities JCR SCIE)]
2 Wolf, Yuri I; Silas, Sukrit; Wang, Yongjie; Wu, Shuang; Bocek, Michael; Kazlauskas, Darius; Krupovic, Mart; Fire, Andrew; Dolja, Valerian V; Koonin, Eugene V. Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome // Nature microbiology. London : Nature Publishing Group. ISSN 2058-5276. eISSN 2058-5276. 2020, vol. 5, p. 1262-1270. DOI: 10.1038/s41564-020-0755-4. [DB: MEDLINE, Embase, BIOSIS Previews, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 17.745; AIF: 5.079; Q1 (2020 InCities JCR SCIE)]
3 Kazlauskas, Darius; Krupovic, Mart; Guglielmini, Julien; Forterre, Patrick; Venclovas, Česlovas. Diversity and evolution of B-family DNA polymerases // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2020, vol. 48, iss. 18, p. 10142-10156. DOI: 10.1093/nar/gkaa760. [DB: Embase, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 16.971; AIF: 5.817; Q1 (2020 InCities JCR SCIE)]
4 Gasiunas, Giedrius; Young, Joshua K; Karvelis, Tautvydas; Kazlauskas, Darius; Urbaitis, Tomas; Jasnauskaite, Monika; Grusyte, Mantvyda M; Paulraj, Sushmitha; Wang, Po-Hao; Hou, Zhenglin; Dooley, Shane K; Cigan, Mark; Alarcon, Clara; Chilcoat, N Doane; Bigelytė, Greta; Curcuru, Jennifer L; Mabuchi, Megumu; Sun, Zhiyi; Fuchs, Ryan T; Schildkraut, Ezra; Weigele, Peter R; Jack, William E; Robb, G Brett; Venclovas, Česlovas; Šikšnys, Virginijus. A catalogue of biochemically diverse CRISPR-Cas9 orthologs // Nature communications. London : Nature Publishing Group. eISSN 2041-1723. 2020, vol. 11, no. 1, art. no. 5512, p. [1-10]. DOI: 10.1038/s41467-020-19344-1. [DB: Scopus, Science Citation Index Expanded (Web of Science)]

2019
1 Kazlauskas, Darius; Varsani, Arvind; Koonin, Eugene V.; Krupovic, Mart. Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids // Nature communications. London : Nature Publishing Group. eISSN 2041-1723. 2019, vol. 10, iss. 1, art. no. 3425, p. [1-12]. DOI: 10.1038/s41467-019-11433-0. [DB: MEDLINE, Science Citation Index Expanded (Web of Science), Scopus]
2 Wolf, Yuri I.; Kazlauskas, Darius; Iranzo, Jaime; Lucía-Sanz, Adriana; Kuhn, Jens H.; Krupovic, Mart; Dolja, Valerian V.; Koonin, Eugene V. Reply to Holmes and Duchêne, “Can sequence phylogenies safely infer the origin of the global virome?": Deep phylogenetic analysis of RNA viruses is highly challenging but not meaningless // mBio. Washington : American Society for Microbiology. eISSN 2150-7511. 2019, vol. 10, iss. 2, art. no. e00542-19, p. 1-3. DOI: 10.1128/mBio.00542-19. [DB: Embase, CAB Abstracts, Scopus, Science Citation Index Expanded (Web of Science)]

2018
1 Kazlauskas, Darius; Sezonov, Guennadi; Charpin, Nicole; Venclovas, Česlovas; Forterre, Patrick; Krupovic, Mart. Novel families of archaeo-eukaryotic primases associated with mobile genetic elements of bacteria and archaea // Journal of molecular biology. London : Academic Press Inc Elsevier science. ISSN 0022-2836. eISSN 1089-8638. 2018, Vol. 430, iss. 5, p. 737-750. DOI: 10.1016/j.jmb.2017.11.014. [DB: Scopus, Biological Abstracts, Embase, MEDLINE, Chemical abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 5.067; AIF: 4.417; Q1 (2018 InCities JCR SCIE)]
2 Kazlauskas, Darius; Krupovic, Mart; Venclovas, Česlovas. Role of viruses in the evolution of eukaryotic B-family DNA polymerases // Viruses of microbes 2018 : EMBO Workshop, 09-13 July 2018, Wrocław, Poland : abstract book. Wrocław : EMBO. 2018, abstract no. 266, p. 244. Prieiga per internetą: <https://wca.wroc.pl/files/dokumenty/10480/KonferencjaVirusesofMicrobesAbstract%20Book%20VoM2018_FIN.pdf> [žiūrėta 2018-12-19].
3 Kazlauskas, Darius; Varsani, Arvind; Krupovic, Mart. Pervasive chimerism in the replication-associated proteins of uncultured single-stranded DNA viruses // Viruses. Basel : MDPI AG. ISSN 1999-4915. 2018, vol. 10, no 4, p. 124-146. DOI: 10.3390/v10040187. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 3.811; AIF: 3.683; Q2 (2018 InCities JCR SCIE)]
4 Wolf, Yuri I.; Kazlauskas, Darius; Iranzo, Jaime; Lucía-Sanz, Adriana; Kuhn, Jens H.; Krupovic, Mart; Dolja, Valerian V.; Koonin, Eugene V. Origins and evolution of the global RNA virome // mBio. Washington : American Society for Microbiology. ISSN 2161-2129. eISSN 2150-7511. 2018, vol. 9, iss. 6, art. no. e02329-18, p. 1-31. DOI: 10.1128/mBio.02329-18. [DB: CAB Abstracts, Embase, Scopus, Science Citation Index Expanded (Web of Science)]
5 Kazlauskas, Darius; Varsani, Arvind; Koonin, Eugene V.; Krupovic, Mart. Viengrandės DNR virusų kilmės istorija // Bioateitis: gamtos ir gyvybės mokslų perspektyvos : 11-oji jaunųjų mokslininkų konferencija, 2018 m. gruodžio 14 d.: pranešimų santraukos. Vilnius : Lietuvos mokslų akademijos leidykla. 2018, p. 5-6. Prieiga per internetą: <http://www.lma.lt/uploads/2017-12-07_BIOATEITIS_pranesimu_santraukos.pdf> [žiūrėta 2019-09-25].

2017
1 Kazlauskas, Darius; Dayaram, Anisha; Kraberger, Simona; Goldstien, Sharyn; Varsani, Arvind; Krupovic, Mart. Evolutionary history of ssDNA bacilladnaviruses features horizontal acquisition of the capsid gene from ssRNA nodaviruses // Virology. San Diego : Academic Press Inc Elsevier science. ISSN 0042-6822. 2017, Vol. 504, p. 114-121. DOI: 10.1016/j.virol.2017.02.001. [DB: Scopus, Current Contents, Biological Abstracts, Embase, Chemical abstracts, MEDLINE, Science Citation Index Expanded (Web of Science)] [IF: 3.374; AIF: 3.764; Q2 (2017 InCities JCR SCIE)]
2 Quiberoni, Andrea; Guglielmotti, Daniela; Mercanti, Diego; Morbidoni, Héctor Ricardo; Capra, María Luján; Piuri, Mariana; Marcó, Mariángeles Briggiler; Raya, Raul Ricardo; Pujato, Silvina; Suárez, Viviana; Petrovski, Steve; Gillis, Annika; Toussaint, Ariane; Mahillon, Jacques; Pirnay, Jean-Paul; Hernalsteens, Jean-Pierre; Vaneechoutte, Mario; Lavigne, Rob; Ceyssens, Pieter-Jan; da Silva, Aline Maria; Ferreira, Davis F.; Zerbini, F. Murilo; Kropinski, Andrew; Lang, Andrew; Svircev, Antonet; Leon-Velarde, Carlos; Moineau, Sylvain; Sabour, Parviz; Tremblay, Denise; Niu, Dongyan; Vidakovic, Dragana Obreht; Anany, Hany; Sanfacon, Helene; Santander, Javier; Dennis, Jonathan J.; Warriner, Keith; Stanford, Kim; Griffiths, Mansel W; Slavcev, Roderick A; Hayes, Sidney; McAllister, Tim A.; Hosseini-Doust, Zeinab; Moreno Switt, Andrea; Le, Shuai; Yang, Yong; Reyes, Alejandro; Aziz, Ramy Karam; El-Arabi, Tarek; Roine, Elina; Oksanen, Hanna M.; Jalasvuori, Matti; Skurnik, Mikael; Poranen, Minna F.; Butcher, Sarah; Geslin, Claire; Prangishvili, David; Roach, Dwayne; Enault, François; Debarbieux, Laurent; De Sordi, Luisa; Krupovic, Mart; Cvirkaite-Krupovic, Virginija; Hoyle, Naomi; Sadunishvili, Tinatin; Rohde, Christine; Neve, Horst; Wittmann, Johannes; Kittler, Sophie; Karunasagar, Indrani; Sabouri, Salehe; Hazan, Ronen; Kaneko, Jun; Mochizuki, Tomohiro; Ryu, Sangryeol; Kazlauskas, Darius; Truncaitė, Lidija; Learn Han, Lee; Eslava Campos, Carlos A.; Guarneros Pena, Gabriel; Dutilh, B.E. (Bas); de Nóbrega, Franklin Luzia; Wegrzyn, Grzegorz; Barylski, Jakub; Dąbrowska, Krystyna; Skowron, Piotr; Santos, Silvio; Krylov, Victor; Knezevic-Vucevic, Jelena; Knezevic, Petar; Petrovic, Olga; Aleksic Sabo, Verica; Kostanjsek, Rok; Rybicki, Ed; Trindade, Marla; Zablocki, Olivier; Oh, Hyun-Myung; Muniesa, Maite; Rodríguez, Modesto Redrejo; Berjón Otero, Mónica; Lehnherr, Hansjörg; Klumpp, Jochen; Tovkach, Fedor; Gorb, Tetiana; Maksimenko, Liudmila; Romaniuk, Liudmila; Kushkina, Alla; Korol, Natalia; Faidiuk, Iuliia; Zhuminska, Ganna; McCarthy, Alan; Millard, Andrew; Adriaenssens, Evelien; Allison, Heather; Hinton, Jay CD; Penadés, José R; Hoyles, Lesley; Smith, Maggie; Mayer, Melinda; Sulakvelidze, Alexander; Camilli, Andrew; Varsani, Arvind; Ely III, Bert; Nelson, Daniel C.; Kutter, Elizabeth; Rohwer, Forest; Jang, Ho Bin; Thomas, Julie; Stedman, Kenneth; Temple, Louise; Liles, Mark R.; Wiedmann, Martin; Breitbart, Mya; Calendar, Richard; Edwards, Rob; Harrison, Robert; Villafane, Robert; Sabanadzovic, Sead; Hope, Sandra; Abedon, Stephen; Caruso, Steven M.; Rao, Venigalla B.; Fischetti, Vincent A.; Kuhn, Jens H. Change ICVCN Rule 3.11. [s.l] : ICTV, 2017. 7 p. DOI: 10.13140/RG.2.2.36261.19684.

2016
1 Kazlauskas, Darius; Krupovic, Mart; Venclovas, Česlovas. The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2016, Vol. 44, no 10, p. 4551-4564. DOI: 10.1093/nar/gkw322. [DB: Science Citation Index Expanded (Web of Science), Scopus, Biobase, Chemical abstracts, CABI Abstracts Databases] [IF: 10.162; AIF: 4.207; Q1 (2016 InCities JCR SCIE)]

2014
1 Gudiukaitė, Renata; Gegeckas, Audrius; Kazlauskas, Darius; Čitavičius, Donaldas Jonas. Influence of N- and/or C-terminal regions on activity, expression, characteristics and structure of lipase from Geobacillus sp. 95 // Extremophiles. Tokyo : Springer Japan KK. ISSN 1431-0651. 2014, vol. 18, iss. 1, p. 131-145. DOI: 10.1007/s00792-013-0605-x. [DB: Science Citation Index Expanded (Web of Science), SpringerLink, MEDLINE, Scopus] [IF: 2.306; AIF: 3.919; Q3 (2014 InCities JCR SCIE)]
2 Kazlauskas, Darius; Venclovas, Česlovas. Viral DNA replication: new insights and discoveries from large scale computational analysis // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 13. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-05-16].
3 Kazlauskas, Darius; Venclovas, Česlovas. Herpesviral helicase-primase subunit UL8 is inactivated B-family polymerase // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. 2014, vol 30, no 15, p. 2093-2097. DOI: 10.1093/bioinformatics/btu204. [DB: Embase, Biological Abstracts, MEDLINE, Current Contents / Life Sciences, Chemical abstracts, CAB Abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 4.981; AIF: 3.089; Q1 (2014 InCities JCR SCIE)]

2012
1 Kazlauskas, Darius; Venclovas, Česlovas. Two distinct SSB protein families in nucleo-cytoplasmic large DNA viruses // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. 2012, Vol. 28, no. 24, p. 3186-3190. DOI: 10.1093/bioinformatics/bts626. [DB: Embase, Biological Abstracts, MEDLINE, Current Contents / Life Sciences, Chemical abstracts, CAB Abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 5.323; AIF: 3.187; Q1 (2012 InCities JCR SCIE)]

2011
1 Kazlauskas, Darius; Venclovas, Česlovas. Computational analysis of DNA replicases in double-stranded DNA viruses: relationship with the genome size // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2011, vol. 39, no. 19, p. 8291-8305. DOI: 10.1093/nar/gkr564. [DB: Biological Abstracts, MEDLINE, Science Citation Index Expanded (Web of Science)] [IF: 8.026; AIF: 4.273; Q1 (2011 InCities JCR SCIE)]