VU Gyvybės mokslų centro autoriaus 'Gytis Dudas' publikacijų sąrašas

2025
1 Peacock, Thomas; Moncla, Louise; Dudas, Gytis; VanInsberghe, David; Sukhova, Ksenia; Lloyd-Smith, James O; Worobey, Michael; Lowen, Anice C; Nelson, Martha I. The global H5N1 influenza panzootic in mammals // Nature. Berlin : Springer Nature. eISSN 1476-4687. 2025, vol. 637, p. 304-313. DOI: 10.1038/s41586-024-08054-z. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Rehman, Zaira; Edington, Katherine; Jamal, Zunera; Kritz-Wilson, Angelika; Dudas, Gytis; Sims, Samuel; Myers, Richard; Afrough, Babak; Inamdar, Leena; Haider, Syed Adnan; Ikram, Aamer; Salman, Muhammad; Umair, Massab. The introduction of the SARS-CoV-2 BA.4 lineage into Pakistan // Archives of virology. Vienna : Springer Nature. ISSN 0304-8608. eISSN 1432-8798. 2025, vol. 170, iss. 2, art. no. 26, p. [1-9]. DOI: 10.1007/s00705-024-06211-3. [DB: Science Citation Index Expanded (Web of Science), Scopus]
3 Repšytė, Monika (autorius, pristatytojas); Norkienė, Milda; Dudas, Gytis. Exploring the cell entry potential of Wuhan mosquito virus 6 glycoprotein // The COINS 2025: international conference of life sciences : book of abstracts. Vilnius : Vilniaus universitetas. 2025, p. 162. Prieiga per internetą: <https://www.thecoins.eu/static/resources/booksofabstracts/COINS2025.pdf>.
4 Baele, Guy; Carvalho, Luiz M; Brusselmans, Marius; Dudas, Gytis; Ji, Xiang; Mccrone, John T; Lemey, Philippe; Suchard, Marc A; Rambaut, Andrew. HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. eISSN 1367-4811. 2025, vol. 41, iss. 10, p. [1-7]. DOI: 10.1093/bioinformatics/btaf488. [DB: Science Citation Index Expanded (Web of Science), Scopus]
5 Bollen, Nena; Hong, Samuel L.; Potter, Barney I.; Lienhard, Reto; Tritten, Marie-Lise; Sierro, Nicolas; Guedj, Emmanuel; Dulize, Rémi; Bornand, David; Auberson, Mehdi; Berthouzoz, Maxime; Duvoisin, Pauline; Ivanov, Nikolai V.; Peitsch, Manuel C.; Hill, Verity; Matheeussen, Veerle; Bontems, Sébastien; Verhasselt, Bruno; Degosserie, Jonathan; Waumans, Luc; Bayon-Vicente, Guillaume; Reynders, Marijke; Cattoir, Lien; Coste, Valentin; Valgaeren, Hanne; Van Weyenbergh, Johan; Cuypers, Lize; André, Emmanuel; Durkin, Keith; Maes, Piet; Khan, Kamran; Huber, Carmen; Suchard, Marc A.; Foudi, Martin Maidadi; Godwe, Célestin; Yifomnjou, Moise Henri Moumbeket; Landry, Messanga; Njouom, Richard; Kingebeni, Placide Mbala; Oluniyi, Paul; Olawoye, Idowu B.; Happi, Christian; Ayouba, Ahidjo; Peeters, Martine; Behillil, Sylvie; Simon-Lorière, Etienne; Hölzer, Martin; Dellicour, Simon; Dudas, Gytis; Baele, Guy. Tracking down the origin and subsequent spread of SARS-CoV-2 lineage B.1.619 // Virus evolution. Oxford : Oxford University Press. eISSN 2057-1577. 2025, vol. 11, iss. 1, p. 1-14. DOI: 10.1093/ve/veaf017. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2024
1 Glascock, Abigail; Waltari, Eric; Dudas, Gytis; Wong, Joan; Ahyong, Vida. PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes // BMC Bioinformatics. London : BioMed Central Ltd. eISSN 1471-2105. 2024, vol. 25, iss. 1, art. no. 49, p. [1-13]. DOI: 10.1186/s12859-024-05640-w. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Black, Allison; Dudas, Gytis. The applied genomic epidemiology handbook: A practical guide to leveraging pathogen genomic data in public health : 1st edition. Abingdon : CRC press, 2024. 164 p. (Chapman & Hall/CRC Computational Biology Series). ISBN 9781032530260. eISBN 9781003409809. DOI: 10.1201/9781003409809. [DB: Scopus]
3 Holtz, Andrew; Van Weyenbergh, Johan; Hong, Samuel L.; Cuypers, Lize; O'Toole, Aine; Dudas, Gytis; Gerdol, Marco; Potter, Barney I.; Ntoumi, Francine; Mapanguy, Claujens Chastel Mfoutou; Vanmechelen, Bert; Wawina-Bokalanga, Tony; Van Holm, Bram; Menezes, Soraya Maria; Soubotko, Katja; Van Pottelbergh, Gijs; Wollants, Elke; Vermeersch, Pieter; Jacob, Ann-Sophie; Maes, Brigitte; Obbels, Dagmar; Matheeussen, Veerle; Martens, Geert; Gras, Jeremie; Verhasselt, Bruno; Laffut, Wim; Vael, Carl; Goegebuer, Truus; van der Kant, Rob; Rousseau, Frederic; Schymkowitz, Joost; Serrano, Luis; Delgado, Javier; Wenseleers, Tom; Bours, Vincent; Andre, Emmanuel; Suchard, Marc A.; Rambaut, Andrew; Dellicour, Simon; Maes, Piet; Durkin, Keith; Baele, Guy. Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature // BMC infectious diseases. London : BMC. eISSN 1471-2334. 2024, vol. 24, iss. 1, art. no. 1139, p. [1-18]. DOI: 10.1186/s12879-024-09967-w. [DB: Science Citation Index Expanded (Web of Science), Scopus]
4 Brusselmans, Marius; Carvalho, Luiz Max; L. Hong, Samuel; Gao, Jiansi; Matsen, Frederick A.; Rambaut, Andrew; Lemey, Philippe; Suchard, Marc A.; Dudas, Gytis; Baele, Guy. On the importance of assessing topological convergence in Bayesian phylogenetic inference // Virus evolution. Oxford : Oxford University Press. eISSN 2057-1577. 2024, vol. 10, iss. 1, art. no. veae081, p. [1-13]. DOI: 10.1093/ve/veae081. [DB: Science Citation Index Expanded (Web of Science), Scopus]
5 Tomkuvienė, Miglė; Štitilytė, Miglė; Mickutė, Milda; Dudas, Gytis; Olendraitė, Ingrida; Gasiūnas, Giedrius. Kodas RNR. Nuo kovos su virusais iki tobulų genų. Vilnius : Vilniaus universiteto leidykla, 2024. 198 p. ISBN 9786090710814.

2023
1 Dudas, Gytis; Batson, Joshua. Accumulated metagenomic studies reveal recent migration, whole genome evolution, and undiscovered diversity of orthomyxoviruses // Journal of virology. Washington : American Society for Microbiology. ISSN 0022-538X. eISSN 1098-5514. 2023, vol. 97, iss. 10, art. no. e0105623, p. [1-15]. DOI: 10.1128/jvi.01056-23. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 4.000; AIF: 4.200; Q2 (2023 InCities JCR SCIE)]
2 Selhorst, Philippe; Lequime, Sebastian; Dudas, Gytis; Proesmans, Sam; Lutumba, Pascal; Katshongo, Freddy; Ramadan, Kadrie; Micalessi, Isabel; Ahuka-Mundeke, Steve; Vanlerberghe, Veerle; Van Esbroeck, Marjan; Ariën, KevinK. Phylogeographic analysis of dengue virus serotype 1 and cosmopolitan serotype 2 in Africa // International journal of infectious diseases. Oxford : Elsevier B.V. ISSN 1201-9712. eISSN 1878-3511. 2023, vol. 133, p. 46-52. DOI: 10.1016/j.ijid.2023.04.391. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 4.800; AIF: 4.200; Q1 (2023 InCities JCR SCIE)]
3 Dudas, Gytis. The modern response to infectious disease outbreaks using genetic sequencing // Open readings 2023: 66th international conference for students of physics and natural sciences, April 18-21, 2023, Vilnius, Lithuania: annual abstract book / editors: M. Keršys, Š. Mickus. Vilnius : Vilnius University Press, 2023. eISBN 9786090708835. p. 13. (Vilnius University Proceedings, eISSN 2669-0233 ; vol. 34). [DB: Dimensions]
4 Dudas, Gytis; Petrikaitė, Vika (kino operatorius). Genominė epidemiologija šiuolaikinių protrūkių fronto linijose : [paskaita] // Vrublevskių biblioteka : tinklalaidė. Vilnius : Lietuvos mokslų akademijos Vrublevskių biblioteka. 2023, rugs. 4, 1 vaizdo įrašas (1 val., 19 min., 27 sek.).
5 Dudas, Gytis; Petrikaitė, Vika (kino operatorius). Genominė epidemiologija šiuolaikinių protrūkių fronto linijose : [paskaita] // Vrublevskių biblioteka ir bičiuliai : tinklalaidė. Vilnius : Lietuvos mokslų akademijos Vrublevskių biblioteka. 2023, Serija 4.19, 1 garso įrašas (1 val., 18 min., 24 sek.). Prieiga per internetą: <https://creators.spotify.com/pod/profile/lmavb/episodes/4-19---Genomin-epidemiologija-iuolaikini-protrki-fronto-linijose-e28s95i> [žiūrėta 2025-06-30].

2022
1 Klitting, Raphaëlle; Kafetzopoulou, Liana E.; Thiery, Wim; Dudas, Gytis; Gryseels, Sophie; Kotamarthi, Anjali; Vrancken, Bram; Gangavarapu, Karthik; Momoh, Mambu; Sandi, John Demby; Goba, Augustine; Alhasan, Foday; Grant, Donald S.; Okogbenin, Sylvanus; Ogbaini-Emovo, Ephraim; Garry, Robert F.; Smither, Allison R.; Zeller, Mark; Pauthner, Matthias G.; McGraw, Michelle; Hughes, Laura D.; Duraffour, Sophie; Günther, Stephan; Suchard, Marc A.; Lemey, Philippe; Andersen, Kristian G.; Dellicour, Simon. Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades // Nature Communications. Berlin : Nature Portfolio. eISSN 2041-1723. 2022, vol. 13, iss. 1, art. no. 5596, p. [1-15]. DOI: 10.1038/s41467-022-33112-3. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Brito, Anderson F; Semenova, Elizaveta; Dudas, Gytis; Hassler, Gabriel W; Kalinich, Chaney C; Kraemer, Moritz U G; Ho, Joses; Tegally, Houriiyah; Githinji, George; Agoti, Charles N; Matkin, Lucy E; Whittaker, Charles; Howden, Benjamin P; Sintchenko, Vitali; Zuckerman, Neta S; Mor, Orna; Blankenship, Heather M; de Oliveira, Tulio; Lin, Raymond T P; Siqueira, Marilda Mendonça; Resende, Paola Cristina; Vasconcelos, Ana Tereza R; Spilki, Fernando R; Aguiar, Renato Santana; Alexiev, Ivailo; Ivanov, Ivan N; Philipova, Ivva; Carrington, Christine V F; Sahadeo, Nikita S D; Branda, Ben; Gurry, Céline; Maurer-Stroh, Sebastian; Naidoo, Dhamari; von Eije, Karin J; Perkins, Mark D; van Kerkhove, Maria; Hill, Sarah C; Sabino, Ester C; Pybus, Oliver G; Dye, Christopher; Bhatt, Samir; Flaxman, Seth; Suchard, Marc A; Grubaugh, Nathan D; Baele, Guy; Faria, Nuno R. Global disparities in SARS-CoV-2 genomic surveillance // Nature communications. Berlin : Nature Portfolio. eISSN 2041-1723. 2022, vol. 13, no. 1, art. no. 7003, p. [1-13]. DOI: 10.1038/s41467-022-33713-y. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE]