VU Gyvybės mokslų centro autoriaus 'Kliment Olechnovič' publikacijų sąrašas

2023
1 Olechnovič, Kliment; Venclovas, Česlovas. VoroIF-GNN: Voronoi tessellation-derived protein-protein interface assessment using a graph neural network // Proteins: Special Issue:CASP15: Critical Assessment of methods for Structure Prediction, 15th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2023, vol. 91, iss. 12, p. 1879-1888. DOI: 10.1002/prot.26554. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Olechnovič, Kliment; Valančauskas, Lukas; Dapkūnas, Justas; Venclovas, Česlovas. Prediction of protein assemblies by structure sampling followed by interface-focused scoring // Proteins - structure function and bioinformatics: Special issue:CASP15: Critical Assessment of methods for Structure Prediction, 15th round. Hoboken : Wiley. eISSN 1097-0134. 2023, vol. 91, iss. 12, p. 1724-1733. DOI: 10.1002/prot.26569. [DB: Science Citation Index Expanded (Web of Science)]
3 Lensink, Marc F.; Brysbaert, Guillaume; Raouraoua, Nessim; Bates, Paul A.; Giulini, Marco; Honorato, Rodrigo V.; van Noort, Charlotte; Teixeira, Joao M. C.; Bonvin, Alexandre M. J. J.; Kong, Ren; Shi, Hang; Lu, Xufeng; Chang, Shan; Liu, Jian; Guo, Zhiye; Chen, Xiao; Morehead, Alex; Roy, Raj S.; Wu, Tianqi; Giri, Nabin; Quadir, Farhan; Chen, Chen; Cheng, Jianlin; Del Carpio, Carlos A.; Ichiishi, Eichiro; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Harmalkar, Ameya; Chu, Lee-Shin; Canner, Sam; Smanta, Rituparna; Gray, Jeffrey J.; Li, Hao; Lin, Peicong; He, Jiahua; Tao, Huanyu; Huang, Sheng-You; Roel-Touris, Jorge; Jimenez-Garcia, Brian; Christoffer, Charles W.; Jain, Anika J.; Kagaya, Yuki; Kannan, Harini; Nakamura, Tsukasa; Terashi, Genki; Verburgt, Jacob C.; Zhang, Yuanyuan; Zhang, Zicong; Fujuta, Hayato; Sekijima, Masakazu; Kihara, Daisuke; Khan, Omeir; Kotelnikov, Sergei; Ghani, Usman; Padhorny, Dzmitry; Beglov, Dmitri; Vajda, Sandor; Kozakov, Dima; Negi, Surendra S.; Ricciardelli, Tiziana; Barradas-Bautista, Didier; Cao, Zhen; Chawla, Mohit; Cavallo, Luigi; Oliva, Romina; Yin, Rui; Cheung, Melyssa; Guest, Johnathan D.; Lee, Jessica; Pierce, Brian G.; Shor, Ben; Cohen, Tomer; Halfon, Matan; Schneidman-Duhovny, Dina; Zhu, Shaowen; Yin, Rujie; Sun, Yuanfei; Shen, Yang; Maszota-Zieleniak, Martyna; Bojarski, Krzysztof K.; Lubecka, Emilia A.; Marcisz, Mateusz; Danielsson, Annemarie; Dziadek, Lukasz; Gaardlos, Margrethe; Gieldon, Artur; Liwo, Adam; Samsonov, Sergey A.; Slusarz, Rafal; Zieba, Karolina; Sieradzan, Adam K.; Czaplewski, Cezary; Kobayashi, Shinpei; Miyakawa, Yuta; Kiyota, Yasuomi; Takeda-Shitaka, Mayuko; Olechnovič, Kliment; Valančauskas, Lukas; Dapkūnas, Justas; Venclovas, Česlovas; Wallner, Bjorn; Yang, Lin; Hou, Chengyu; He, Xiaodong; Guo, Shuai; Jiang, Shenda; Ma, Xiaoliang; Duan, Rui; Qui, Liming; Xu, Xianjin; Zou, Xiaoqin; Velankar, Sameer; Wodak, Shoshana J. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment // Proteins: structure, function and bioinformatics: Special Issue: CASP15: Critical Assessment of methods for Structure Prediction, 15th round. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2023, vol. 91, iss. 12, p. 1658-1683. DOI: 10.1002/prot.26609. [DB: Science Citation Index Expanded (Web of Science), Scopus]
4 Schweke, Hugo; Xu, Qifang; Tauriello, Gerardo; Pantolini, Lorenzo; Schwede, Torsten; Cazals, Frédéric; Lhéritier, Alix; Fernandez-Recio, Juan; Rodríguez-Lumbreras, Luis Angel; Schueler-Furman, Ora; Varga, Julia K.; Jiménez-García, Brian; Réau, Manon F.; Bonvin, Alexandre M. J. J.; Savojardo, Castrense; Martelli, Pier-Luigi; Casadio, Rita; Tubiana, Jérôme; Wolfson, Haim J.; Oliva, Romina; Barradas-Bautista, Didier; Ricciardelli, Tiziana; Cavallo, Luigi; Venclovas, Česlovas; Olechnovič, Kliment; Guerois, Raphael; Andreani, Jessica; Martin, Juliette; Wang, Xiao; Terashi, Genki; Sarkar, Daipayan; Christoffer, Charles; Aderinwale, Tunde; Verburgt, Jacob; Kihara, Daisuke; Marchand, Anthony; Correia, Bruno E.; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Dey, Sucharita; Dunbrack, Roland L.; Levy, Emmanuel D.; Wodak, Shoshana J. Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study // Proteomics. Hoboken : Wiley. ISSN 1615-9853. eISSN 1615-9861. 2023, vol. 23, iss. 17, art. no. 2200323, p. [1-21]. DOI: 10.1002/pmic.202200323. [DB: Science Citation Index Expanded (Web of Science), Scopus]

2021
1 Igashov, Ilia; Olechnovič, Kliment; Kadukova, Maria; Venclovas, Česlovas; Grudinin, Sergei. VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. eISSN 1460-2059. 2021, vol. 37, no. 16, p. 2332-2339. DOI: 10.1093/bioinformatics/btab118. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE] [IF: 6.931; AIF: 4.849; Q1 (2021 InCities JCR SCIE)]
2 Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas. Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction // Proteins: structure, function, and bioinformatics: Special Issue: CASP14: Critical Assessment of methods of protein Structure Prediction, 14th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2021, vol. 89, iss. 12, p. 1834-1843. DOI: 10.1002/prot.26167. [DB: Science Citation Index Expanded (Web of Science), Scopus, BIOSIS Previews, MEDLINE, INSPEC] [IF: 4.088; AIF: 5.561; Q2 (2021 InCities JCR SCIE)]
3 Lensink, Marc F; Brysbaert, Guillaume; Mauri, Théo; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael A G; Clarence, Tereza; Bates, Paul A; Kong, Ren; Liu, Bin; Yang, Guangbo; Liu, Ming; Shi, Hang; Lu, Xufeng; Chang, Shan; Roy, Raj S; Quadir, Farhan; Liu, Jian; Cheng, Jianlin; Antoniak, Anna; Czaplewski, Cezary; Giełdoń, Artur; Kogut, Mateusz; Lipska, Agnieszka G; Liwo, Adam; Lubecka, Emilia A; Maszota-Zieleniak, Martyna; Sieradzan, Adam K; Ślusarz, Rafał; Wesołowski, Patryk A; Zięba, Karolina; Del Carpio Muñoz, Carlos A; Ichiishi, Eiichiro; Harmalkar, Ameya; Gray, Jeffrey J; Bonvin, Alexandre M J J; Ambrosetti, Francesco; Vargas Honorato, Rodrigo; Jandova, Zuzana; Jiménez-García, Brian; Koukos, Panagiotis I; Van Keulen, Siri; Van Noort, Charlotte W; Réau, Manon; Roel-Touris, Jorge; Kotelnikov, Sergei; Padhorny, Dzmitry; Porter, Kathryn A; Alekseenko, Andrey; Ignatov, Mikhail; Desta, Israel; Ashizawa, Ryota; Sun, Zhuyezi; Ghani, Usman; Hashemi, Nasser; Vajda, Sandor; Kozakov, Dima; Rosell, Mireia; Rodríguez-Lumbreras, Luis A; Fernandez-Recio, Juan; Karczynska, Agnieszka; Grudinin, Sergei; Yan, Yumeng; Li, Hao; Lin, Peicong; Huang, Sheng-You; Christoffer, Charles; Terashi, Genki; Verburgt, Jacob; Sarkar, Daipayan; Aderinwale, Tunde; Wang, Xiao; Kihara, Daisuke; Nakamura, Tsukasa; Hanazono, Yuya; Gowthaman, Ragul; Guest, Johnathan D; Yin, Rui; Taherzadeh, Ghazaleh; Pierce, Brian G; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Sun, Yuanfei; Zhu, Shaowen; Shen, Yang; Park, Taeyong; Woo, Hyeonuk; Yang, Jinsol; Kwon, Sohee; Won, Jonghun; Seok, Chaok; Kiyota, Yasuomi; Kobayashi, Shinpei; Harada, Yoshiki; Takeda-Shitaka, Mayuko; Kundrotas, Petras J; Singh, Amar; Vakser, Ilya A; Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Wodak, Shoshana J. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment // Proteins: structure, function, and bioinformatics: Special Issue: CASP14: Critical Assessment of methods of protein Structure Prediction, 14th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2021, vol. 89, iss. 12, p. 1800-1823. DOI: 10.1002/prot.26222. [DB: Science Citation Index Expanded (Web of Science), Scopus, BIOSIS Previews, MEDLINE, INSPEC] [IF: 4.088; AIF: 5.561; Q2 (2021 InCities JCR SCIE)]
4 Kryshtafovych, Andriy; Moult, John; Billings, Wendy M; Della Corte, Dennis; Fidelis, Krzysztof; Kwon, Sohee; Olechnovič, Kliment; Seok, Chaok; Venclovas, Česlovas; Won, Jonghun. Modeling SARS-CoV-2 proteins in the CASP-commons experiment // Proteins: structure, function, and bioinformatics: Special Issue: CASP14: Critical Assessment of methods of protein Structure Prediction, 14th round. Hoboken : Wiley. ISSN 0887-3585. eISSN 1097-0134. 2021, vol. 89, iss. 12, p. 1987-1996. DOI: 10.1002/prot.26231. [DB: Science Citation Index Expanded (Web of Science), Scopus, PubMed] [IF: 4.088; AIF: 5.561; Q2 (2021 InCities JCR SCIE)]
5 Olechnovič, Kliment; Venclovas, Česlovas. VoroContacts: a tool for the analysis of interatomic contacts in macromolecular structures // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. eISSN 1460-2059. 2021, vol. 37, iss. 24, p. 4873-4875. DOI: 10.1093/bioinformatics/btab448. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE] [IF: 6.931; AIF: 4.849; Q1 (2021 InCities JCR SCIE)]
6 Dapkūnas, Justas; Timinskas, Albertas; Olechnovič, Kliment; Tomkuvienė, Miglė; Venclovas, Česlovas. PPI3D: a computational resource for searching, analysis and modeling protein-protein, protein-peptide and protein-nucleic acid interactions // Protein science: Award Winners and Abstracts of the 35th Anniversary Symposium of The Protein Society, July 7–14, 2021 | Virtual. Hoboken : Wiley. ISSN 0961-8368. eISSN 1469-896X. 2021, vol. 30, suppl. 1, art. no. 507, p. 189. DOI: 10.1002/pro.4191. [DB: Science Citation Index Expanded (Web of Science)] [IF: 6.993; AIF: 6.490; Q1 (2021 InCities JCR SCIE)]

2020
1 Dapkūnas, Justas; Kairys, Visvaldas; Olechnovič, Kliment; Venclovas, Česlovas. Template-based modeling of diverse protein interactions in CAPRI rounds 38-45 // Proteins: structure, function and bioinformatics. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2020, vol. 88, no. 8, p. 939-947. DOI: 10.1002/prot.25845. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 3.756; AIF: 5.051; Q2 (2020 InCities JCR SCIE)]
2 Olechnovič, Kliment; Venclovas, Česlovas. Contact area-based structural analysis of proteins and their complexes using CAD-score // Structural bioinformatics: methods and protocols / ed: Zoltán Gáspári. New York : Springer Science+Business Media, 2020. ISBN 9781071602690. eISBN 9781071602706. p. 75-90. (Methods in molecular biology, ISSN 1064-3745, eISSN 1940-6029 ; vol. 2112). DOI: 10.1007/978-1-0716-0270-6_6. [DB: Book Citation Index - Science (Web of Science), Scopus, SpringerLink]

2019
1 Olechnovič, Kliment; Monastyrskyy, Bohdan; Kryshtafovych, Andriy; Venclovas, Česlovas. Comparative analysis of methods for evaluation of protein models against native structures // Bioinformatics. Oxford : Oxford university press. ISSN 1367-4803. eISSN 1460-2059. 2019, vol. 35, iss. 6, p. 937-944. DOI: 10.1093/bioinformatics/bty760. [DB: BIOSIS Previews, Current Contents, Embase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 5.610; AIF: 3.547; Q1 (2019 InCities JCR SCIE)]
2 Kairys, Visvaldas; Olechnovič, Kliment; Raškevičius, Vytautas; Matulis, Daumantas. In silico modeling of inhibitor binding to carbonic anhydrases // Carbonic anhydrase as drug target: thermodynamics and structure of inhibitor binding / Daumantas Matulis (editor). Cham : Springer Nature, 2019. ISBN 9783030127787. p. 215-232. DOI: 10.1007/978-3-030-12780-0_15.
3 Lensink, Marc F; Brysbaert, Guillaume; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphaël A G; Gerguri, Tereza; Bates, Paul A; Laine, Elodie; Carbone, Alessandra; Grudinin, Sergei; Kong, Ren; Liu, Ran-Ran; Xu, Xi-Ming; Shi, Hang; Chang, Shan; Eisenstein, Miriam; Karczynska, Agnieszka; Czaplewski, Cezary; Lubecka, Emilia; Lipska, Agnieszka; Krupa, Paweł; Mozolewska, Magdalena; Golon, Łukasz; Samsonov, Sergey; Liwo, Adam; Crivelli, Silvia; Pagès, Guillaume; Karasikov, Mikhail; Kadukova, Maria; Yan, Yumeng; Huang, Sheng-You; Rosell, Mireia; Rodríguez-Lumbreras, Luis A; Romero-Durana, Miguel; Díaz-Bueno, Lucía; Fernandez-Recio, Juan; Christoffer, Charles; Terashi, Genki; Shin, Woong-Hee; Aderinwale, Tunde; Maddhuri Venkata Subraman, Sai Raghavendra; Kihara, Daisuke; Kozakov, Dima; Vajda, Sandor; Porter, Kathryn; Padhorny, Dzmitry; Desta, Israel; Beglov, Dmitri; Ignatov, Mikhail; Kotelnikov, Sergey; Moal, Iain H; Ritchie, David W; Chauvot de Beauchêne, Isaure; Maigret, Bernard; Devignes, Marie-Dominique; Ruiz Echartea, Maria E; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Cao, Yue; Shen, Yang; Baek, Minkyung; Park, Taeyong; Woo, Hyeonuk; Seok, Chaok; Braitbard, Merav; Bitton, Lirane; Scheidman-Duhovny, Dina; Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas; Kundrotas, Petras J; Belkin, Saveliy; Chakravarty, Devlina; Badal, Varsha D; Vakser, Ilya A; Vreven, Thom; Vangaveti, Sweta; Borrman, Tyler; Weng, Zhiping; Guest, Johnathan D; Gowthaman, Ragul; Pierce, Brian G; Xu, Xianjin; Duan, Rui; Qiu, Liming; Hou, Jie; Ryan Merideth, Benjamin; Ma, Zhiwei; Cheng, Jianlin; Zou, Xiaoqin; Koukos, Panos I; Roel-Touris, Jorge; Ambrosetti, Francesco; Geng, Cunliang; Schaarschmidt, Jörg; Trellet, Mikael E; Melquiond, Adrien S J; Xue, Li; Jiménez-García, Brian; van Noort, Charlotte W; Honorato, Rodrigo V; Bonvin, Alexandre M J J; Wodak, Shoshana J. Blind prediction of homo- and hetero-protein complexes: the CASP13-CAPRI experiment // Proteins: structure, function, and bioinformatics. Hoboken : Wiley Periodicals, Inc. ISSN 0887-3585. eISSN 1097-0134. 2019, vol. 87, iss. 12, p. 1200-1221. DOI: 10.1002/prot.25838. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.828; AIF: 4.180; Q2 (2019 InCities JCR SCIE)]
4 Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas. Structural modeling of protein complexes: Current capabilities and challenges // Proteins: structure, function and bioinformatics: Special issue: Critical assessment of methods of protein structure prediction. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2019, vol. 87, iss. 12, p. 1222-1232. DOI: 10.1002/prot.25774. [DB: Biological Abstracts, Biobase, Current Contents, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.828; AIF: 4.180; Q2 (2019 InCities JCR SCIE)]
5 Cheng, Jianlin; Choe, Myong-Ho; Elofsson, Arne; Han, Kun-Sop; Hou, Jie; Maghrabi, Ali H. A.; McGuffin, Liam J.; Menéndez-Hurtado, David; Olechnovič, Kliment; Schwede, Torsten; Studer, Gabriel; Uziela, Karolis; Venclovas, Česlovas; Wallner, Björn. Estimation of model accuracy in CASP13 // Proteins: structure, function and bioinformatics: Special issue: Critical assessment of methods of protein structure prediction. Hoboken : John Wiley and Sons Inc. ISSN 0887-3585. eISSN 1097-0134. 2019, vol. 87, iss. 12, p. 1361-1377. DOI: 10.1002/prot.25767. [DB: MEDLINE, Science Citation Index Expanded (Web of Science), Scopus] [IF: 2.828; AIF: 4.180; Q2 (2019 InCities JCR SCIE)]
6 Olechnovič, Kliment; Venclovas, Česlovas. VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. eISSN 1362-4962. 2019, vol. 47, iss. W1, p. W437-W442. DOI: 10.1093/nar/gkz367. [DB: Veterinary Science Database, Embase, BIOSIS Previews, DOAJ, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 11.502; AIF: 4.696; Q1 (2019 InCities JCR SCIE)]

2018
1 Olechnovič, Kliment; Venclovas, Česlovas. Analysis and assessment of protein 3D structures using interatomic contact areas // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 6. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-19].
2 Dapkūnas, Justas; Olechnovič, Kliment; Venclovas, Česlovas. Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection // Proteins: structure, function, and bioinformatics. Hoboken : Wiley Periodicals, Inc. ISSN 0887-3585. eISSN 1097-0134. 2018, vol. 86, iss. S 1, p. 292-301. DOI: 10.1002/prot.25378. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.501; AIF: 3.989; Q3 (2018 InCities JCR SCIE)]

2017
1 Dapkūnas, Justas; Timinskas, Albertas; Olechnovič, Kliment; Margelevičius, Mindaugas; Dičiūnas, Rytis; Venclovas, Česlovas. The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. eISSN 1460-2059. 2017, Vol. 33, Iss. 6, p. 935-937. DOI: 10.1093/bioinformatics/btw756. [DB: MEDLINE, Chemical abstracts, BIOSIS Previews, Biological Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 5.481; AIF: 3.141; Q1 (2017 InCities JCR SCIE)]
2 Olechnovič, Kliment; Venclovas, Česlovas. VoroMQA: Assessment of protein structure quality using interatomic contact areas. // Proteins: structure, function, and bioinformatics. Hoboken : Wiley Periodicals, Inc. ISSN 0887-3585. eISSN 1097-0134. 2017, Vol. 85, Iss. 6, p. 1131-1145. DOI: 10.1002/prot.25278. [DB: MEDLINE, Current Contents, Biological Abstracts, Biobase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 2.274; AIF: 3.826; Q3 (2017 InCities JCR SCIE)]
3 Olechnovič, Kliment; Venclovas, Česlovas. Baltymų erdvinės struktūros modelių analizė ir vertinimas naudojant tarpatominių kontaktų plotus // Bioateitis: gamtos ir gyvybės mokslų perspektyvos : 10-oji jaunųjų mokslininkų konferencija, 2017 m. gruodžio 7 d.: pranešimų santraukos. Vilnius : Lietuvos mokslų akademijos leidykla. 2017, p. 19-20. Prieiga per internetą: <http://www.lma.lt/uploads/2017-12-07_BIOATEITIS_pranesimu_santraukos.pdf> [žiūrėta 2018-03-27].

2014
1 Olechnovič, Kliment; Venclovas, Česlovas. Voronota: a fast and reliable tool for computing the vertices of the Voronoi diagram of atomic balls // Journal of computational chemistry. Hoboken : Wiley-Blackwell. ISSN 0192-8651. 2014, vol. 35, iss. 8, p. 672-681. DOI: 10.1002/jcc.23538. [DB: Scopus, CAS (nenaudotinas), Chemical abstracts, MEDLINE, INSPEC, Science Citation Index Expanded (Web of Science)] [IF: 3.589; AIF: 5.602; Q1 (2014 InCities JCR SCIE)]
2 Olechnovič, Kliment; Venclovas, Česlovas. The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, issue 9, p. 5407-5415. DOI: 10.1093/nar/gku191. [DB: VINITI, MEDLINE, ProQuest (nenaudotinas), Elsevier (nenaudotinas), Ebsco (nenaudotinas), CSA (nenaudotinas), CAB Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
3 Olechnovič, Kliment; Venclovas, Česlovas. The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes // Nucleic acids research. Oxford : Oxford University Press. ISSN 0305-1048. 2014, vol. 42, issue W1, p. W259-W263. DOI: 10.1093/nar/gku294. [DB: VINITI, MEDLINE, ProQuest (nenaudotinas), Elsevier (nenaudotinas), Ebsco (nenaudotinas), CSA (nenaudotinas), CAB Abstracts, Science Citation Index Expanded (Web of Science)] [IF: 9.112; AIF: 4.149; Q1 (2014 InCities JCR SCIE)]
4 Dapkūnas, Justas; Timinskas, Albertas; Olechnovič, Kliment; Margelevičius, Mindaugas; Dičiūnas, Rytis; Venclovas, Česlovas. The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures // 50th anniversary of FEBS : Abstracts book of The XIIIth International Conference of Lithuanian Biochemical Society, June 18-20, 2014. Vilnius. 2014, p. 17. Prieiga per internetą: <http://www.elib.grsu.by/katalog/481236pdf.pdf?d=true> [žiūrėta 2016-05-16].

2013
1 Venclovas, Česlovas; Olechnovič, Kliment. The use of interatomic contact areas for the assessment of RNA 3D structural models // The FEBS Journal. Oxford : Wiley-Blackwell Publishing Ltd. ISSN 1742-464X. 2013, vol. 280, suppl. 1, p. 546-547. Prieiga per internetą: <http://onlinelibrary.wiley.com/doi/10.1111/febs.12340/pdf> [žiūrėta 2013-11-06]. [DB: Chemical abstracts, Index Medicus, Current Awareness in Biological Sciences, AgBiotech News and Information, Science Citation Index Expanded (Web of Science)] [IF: 3.986; AIF: 4.311; Q2 (2013 InCities JCR SCIE)]
2 Olechnovič, Kliment; Kulberkytė, Eleonora; Venclovas, Česlovas. CAD-score:a new contact area difference-based function for evaluation of protein structural models // Proteins: structure, function, and bioinformatics. Hoboken : John Wiley & Sons, Inc. ISSN 0887-3585. 2013, vol. 81, no 1, p. 149-162. DOI: 10.1002/prot.24172. [DB: Embase, Biological Abstracts, Scopus, Elsevier Biobase, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 2.921; AIF: 3.800; Q2 (2013 InCities JCR SCIE)]

2011
1 Olechnovič, Kliment; Margelevičius, Mindaugas; Venclovas, Česlovas. Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure // Bioinformatics. Oxford : Oxford University Press. ISSN 1367-4803. 2011, Vol. 27, no. 5, p. 723-724. DOI: 10.1093/bioinformatics/btq720. [DB: Embase, Biological Abstracts, MEDLINE, Current Contents / Life Sciences, Chemical abstracts, CAB Abstracts, BIOSIS Previews, Science Citation Index Expanded (Web of Science)] [IF: 5.468; AIF: 3.196; Q1 (2011 InCities JCR SCIE)]