VU Gyvybės mokslų centro autoriaus 'Rapolas Žilionis' publikacijų sąrašas

2022
1 Lučiūnaitė, Asta; Dalgėdienė, Indrė; Žilionis, Rapolas; Mašalaitė, Kristina; Norkienė, Milda; Šinkūnas, Andrius; Gedvilaitė, Alma; Kučinskaitė-Kodzė, Indrė; Žvirblienė, Aurelija. Activation of NLRP3 inflammasome by virus-like particles of human polyomaviruses in macrophages // Frontiers in immunology. Lausanne : Frontiers media SA. eISSN 1664-3224. 2022, vol. 13, art. no. 831815, p. [1-23]. DOI: 10.3389/fimmu.2022.831815. [DB: Science Citation Index Expanded (Web of Science), Scopus]
2 Mažutis, Linas (autorius, išradimo); Stonytė, Greta (autorius, išradimo); Kiseliovas, Vaidotas (autorius, išradimo); Žilionis, Rapolas (autorius, išradimo); Janulaitis, Arvydas Eugenijus (autorius, išradimo); Galinis, Robertas (autorius, išradimo); Studer, Sabine (autorius, išradimo); Hilvert, Donald (autorius, išradimo). System and method for synthesis of DNA particles and use thereof / inventors: Linas Mazutis, Greta Stonyte, Vaidotas Kiseliovas, Rapolas Zilionis, Arvydas Janulaitis, Robertas Galinis, Sabine Studer, Donald Hilvert. US11326196B2. 2022-05-10. 25 p. Prieiga per internetą: <https://patents.google.com/patent/US11326196B2/>. [DB: USPTO Patent Full-text and Image Database]
3 Pfirschke, Christina; Žilionis, Rapolas; Engblom, Camilla; Messemaker, Marius; Zou, Angela E.; Rickelt, Steffen; Gort-Freitas, Nicolas A.; Lin, Yunkang; Bill, Ruben; Siwicki, Marie; Gungabeesoon, Jeremy; Sprachman, Melissa M.; Marquard, Angela N.; Rodell, Christopher B.; Cuccarese, Michael F.; Quintana, Jeremy; Ahmed, Maaz S.; Kohler, Rainer H.; Savova, Virginia; Weissleder, Ralph; Klein, Allon M.; Pittet, Mikael J. Macrophage-targeted therapy unlocks antitumoral cross-talk between IFNg-secreting lymphocytes and IL12-producing dendritic cells // Cancer immunology research. Philadelphia : American Association for Cancer Research Inc. ISSN 2326-6066. eISSN 2326-6074. 2022, vol. 10, iss. 1, p. 40-55. DOI: 10.1158/2326-6066.CIR-21-0326. [DB: Science Citation Index Expanded (Web of Science), Scopus] [IF: 10.100; AIF: 6.200; Q1 (2022 InCities JCR SCIE)]

2021
1 Siwicki, Marie; Gort-Freitas, Nicolas A; Messemaker, Marius; Bill, Ruben; Gungabeesoon, Jeremy; Engblom, Camilla; Žilionis, Rapolas; Garris, Christopher; Gerhard, Genevieve M; Kohl, Anna; Lin, Yunkang; Zou, Angela E; Cianciaruso, Chiara; Bolli, Evangelia; Pfirschke, Christina; Lin, Yi-Jang; Piot, Cecile; Mindur, John E; Talele, Nilesh; Kohler, Rainer H; Iwamoto, Yoshiko; Mino-Kenudson, Mari; Pai, Sara I; deVito, Claudio; Koessler, Thibaud; Merkler, Doron; Coukos, Alexander; Wicky, Alexandre; Fraga, Montserrat; Sempoux, Christine; Jain, Rakesh K; Dietrich, Pierre-Yves; Michielin, Olivier; Weissleder, Ralph; Klein, Allon M; Pittet, Mikael J. Resident Kupffer cells and neutrophils drive liver toxicity in cancer immunotherapy // Science immunology. New York : American Association for the Advancement of Science. eISSN 2470-9468. 2021, vol. 6, iss. 61, art. no. eabi7083, p. [1-17]. DOI: 10.1126/sciimmunol.abi7083. [DB: Science Citation Index Expanded (Web of Science), Scopus, PubMed]
2 Maroni, Giorgia; Bassal, Mahmoud A; Krishnan, Indira; Fhu, Chee Wai; Savova, Virginia; Žilionis, Rapolas; Maymi, Valerie A; Pandell, Nicole; Csizmadia, Eva; Zhang, Junyan; Storti, Barbara; Castaño, Julio; Panella, Riccardo; Li, Jia; Gustafson, Corinne E; Fox, Sam; Levy, Rachel D; Meyerovitz, Claire V; Tramontozzi, Peter J; Vermilya, Kimberly; De Rienzo, Assunta; Crucitta, Stefania; Bassères, Daniela S; Weetall, Marla; Branstrom, Art; Giorgetti, Alessandra; Ciampi, Raffaele; Del Re, Marzia; Danesi, Romano; Bizzarri, Ranieri; Yang, Henry; Kocher, Olivier; Klein, Allon M; Welner, Robert S; Bueno, Raphael; Magli, Maria Cristina; Clohessy, John G; Ali, Azhar; Tenen, Daniel G; Levantini, Elena. Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer // Communications biology. Berlin : Nature research. eISSN 2399-3642. 2021, vol. 4, iss. 1, art. no. 370, p. [1-15]. DOI: 10.1038/s42003-021-01897-6. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE, BIOSIS Previews, Dimensions, Current Contents]

2020
1 Pfirschke, Christina; Engblom, Camilla; Gungabeesoon, Jeremy; Lin, Yunkang; Rickelt, Steffen; Žilionis, Rapolas; Massemaker, Marius; Siwicki, Marie; Gerhard, Genevieve M.; Kohl, Anna; Meylan, Etienne; Weissleder, Ralph; Klein, Allon M.; Pittet, Mikael J. Tumor-promoting Ly-6G+ SiglecFhigh cells are mature and long-lived neutrophils // Cell reports. Cambridge, MA : Cell Press. eISSN 2211-1247. 2020, vol. 32, no. 12, art. no.108164, p. [1-19]. DOI: 10.1016/j.celrep.2020.108164. [DB: Science Citation Index Expanded (Web of Science), Scopus, MEDLINE]
2 Mažutis, Linas (autorius, išradimo); Leonavičienė, Greta (autorius, išradimo); Kiseliovas, Vaidotas (autorius, išradimo); Žilionis, Rapolas (autorius, išradimo); Janulaitis, Arvydas (autorius, išradimo); Galinis, Robertas (autorius, išradimo); Studer, Sabine (autorius, išradimo); Hilvert, Donald (autorius, išradimo). System and method for synthesis of dna particles and use thereof. EP3402594B1. 2020-08-19. 30 p. Prieiga per internetą: <https://patents.google.com/patent/EP3402594B1/fr?oq=EP3402594B1>.

2019
1 Jones, Kyle B.; Furukawa, Sachiko; Marangoni, Pauline; Ma, Hongfang; Pinkard, Henry; D'Urso, Rebecca; Žilionis, Rapolas; Klein, Allon M.; Klein, Ophir D. Quantitative clonal analysis and single-cell transcriptomics reveal division kinetics, hierarchy, and fate of oral epithelial progenitor cell // Cell stem cell. Cambridge : Cell press. ISSN 1934-5909. eISSN 1875-9777. 2019, vol. 24, no 1, p. 183-192. DOI: 10.1016/j.stem.2018.10.015. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 20.860; AIF: 5.457; Q1 (2019 InCities JCR SCIE)]
2 Sharir, Amnon; Marangoni, Pauline; Žilionis, Rapolas; Wan, Mian; Wald, Tomas; Hu, Jimmy K.; Kawaguchi, Kyogo; Castillo-Azofeifa, David; Epstein, Leo; Harrington, Kyle; Pagella, Pierfrancesco; Mitsiadis, Thimios; Siebel, Christian W.; Klein, Allon M.; Klein, Ophir D. A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage // Nature cell biology. London : Nature Publishing Group. ISSN 1465-7392. eISSN 1476-4679. 2019, vol. 21, no. 9, p. 1102-1112. DOI: 10.1038/s41556-019-0378-2. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 20.042; AIF: 6.278; Q1 (2019 InCities JCR SCIE)]
3 Žilionis, Rapolas; Engblom, Camilla; Pfirschke, Christina; Savova, Virginia; Zemmour, David; Saatcioglu, Hatice D.; Krishnan, Indira; Maroni, Giorgia; Meyerovitz, Claire V.; Kerwin, Clara M.; Choi, Sun; Richards, William G.; De Rienzo, Assunta; Tenen, Daniel G.; Bueno, Raphael; Levantini, Elena; Pittet, Mikael J.; Klein, Allon M. Single-cell transcriptomics of human and mouse lung cancers reveals conserved myeloid populations across individuals and species // Immunity. Cambridge, MA : Elsevier Inc. ISSN 1074-7613. 2019, vol. 50, no. 5, p. 1317-1334. DOI: 10.1016/j.immuni.2019.03.009. [DB: Scopus, Science Citation Index Expanded (Web of Science)] [IF: 22.553; AIF: 4.589; Q1 (2019 InCities JCR SCIE)]
4 Mažutis, Linas (autorius, išradimo); Stonytė, Greta (autorius, išradimo); Kiseliovas, Vaidotas (autorius, išradimo); Žilionis, Rapolas (autorius, išradimo); Janulaitis, Arvydas Eugenijus (autorius, išradimo); Galinis, Robertas (autorius, išradimo); Studer, Sabine (autorius, išradimo); Hilvert, Donald (autorius, išradimo). System and method for synthesis of DNA particles and use thereof. US20190002943A1. 2019-01-03. 24 p. Prieiga per internetą: <https://patents.google.com/patent/US20190002943A1/en?oq=US20190002943A1> [žiūrėta 2019-12-02].
5 Plasschaert, Lindsey W.; Žilionis, Rapolas; Choo-Wing, Rayman; Savova, Virginia; Knehr, Judith; Roma, Guglielmo; Klein, Allon; Jaffe, Aron. Identification, validation and implications for the CFTR-rich pulmonary ionocyte // Pediatric pulmonology: Supplement: The 33rd Annual North American Cystic Fibrosis Conference, October 31 – November 2, 2019. Hoboken : Wiley. ISSN 8755-6863. eISSN 1099-0496. 2019, vol. 54, suppl. 2, art. no. S03.1, p. S48-S49. DOI: 10.1002/ppul.22494. [DB: Science Citation Index Expanded (Web of Science)] [IF: 2.534; AIF: 3.166; Q2 (2019 InCities JCR SCIE)]

2018
1 Žilionis, Rapolas. New cell type discovery by single cell RNA sequencing // Vita Scientia : international conference, 3rd January 2018, Vilnius : conference book. Vilnius : Vita Scientia. ISSN 2538-791X. 2018, p. 15. Prieiga per internetą: <http://www.vitascientia.lt/book> [žiūrėta 2018-04-19].
2 Plasschaert, Lindsey W.; Žilionis, Rapolas; Choo-Wing, Rayman; Savova, Virginia; Knehr, Judith; Roma, Guglielmo; Klein, Allon M.; Jaffe, Aron B. A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte // Nature. London : Nature Publishing Group. ISSN 0028-0836. eISSN 1476-4687. 2018, vol. 560, no 7718, p. 377-381. DOI: 10.1038/s41586-018-0394-6. [DB: MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 43.070; AIF: 5.145; Q1 (2018 InCities JCR SCIE)]
3 DiSpirito, Joanna R.; Zemmour, David; Ramanan, Deepshika; Cho, Jun; Žilionis, Rapolas; Klein, Allon M.; Benoist, Christophe; Mathis, Diane. Molecular diversification of regulatory T cells in nonlymphoid tissues // Science immunology. Washington : American Association for the Advancement of Science. eISSN 2470-9468. 2018, vol. 3, no. 27, art. no eaat5861, p. 1-15. DOI: 10.1126/sciimmunol.aat5861. [DB: Scopus, Science Citation Index Expanded (Web of Science)]
4 Hrvatin, Sinisa; Hochbaum, Daniel R.; Nagy, M. Aurel; Cicconet, Marcelo; Robertson, Keiramarie; Cheadle, Lucas; Žilionis, Rapolas; Ratner, Alex; Borges-Monroy, Rebeca; Klein, Allon M.; Sabatini, Bernardo L.; Greenberg, Michael E. Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex // Nature neuroscience. New York : Nature Publishing Group. ISSN 1097-6256. eISSN 1546-1726. 2018, vol. 21, iss. 1, p. 120-129. DOI: 10.1038/s41593-018-0112-6. [DB: Current Contents, BIOSIS Previews, MEDLINE, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 21.126; AIF: 4.036; Q1 (2018 InCities JCR SCIE)]
5 Zemmour, David; Žilionis, Rapolas; Kiner, Evgeny; Klein, Allon M.; Mathis, Diane; Benoist, Christophe. Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR article // Nature immunology. New York : Nature Publishing Group. ISSN 1529-2908. eISSN 1529-2916. 2018, vol. 19, iss. 3, p. 291-301. DOI: 10.1038/s41590-018-0051-0. [DB: MEDLINE, Embase, BIOSIS Previews, Academic Search Premier, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 23.530; AIF: 4.470; Q1 (2018 InCities JCR SCIE)]
6 Mažutis, Linas (autorius, išradimo); Stonytė, Greta (autorius, išradimo); Kiseliovas, Vaidotas (autorius, išradimo); Žilionis, Rapolas (autorius, išradimo); Janulaitis, Arvydas Eugenijus (autorius, išradimo); Galinis, Robertas (autorius, išradimo); Studer, Sabine (autorius, išradimo); Hilvert, Donald (autorius, išradimo). System and method for synthesis of DNA particles and use thereof. EP3402594A2. 2018-11-21. Prieiga per internetą: <https://patents.google.com/patent/EP3402594A2/en?assignee=vilnius+university&before=publication:20190101&after=publication:20170101&page=1> [žiūrėta 2019-05-02].

2017
1 Žilionis, Rapolas; Nainys, Juozas; Veres, Adrian; Savova, Virginia; Zemmour, David; Klein, Allon M; Mažutis, Linas. Single-cell barcoding and sequencing using droplet microfluidics // Nature Protocols. London : Macmillan Publishers Limited. ISSN 1754-2189. eISSN 1750-2799. 2017, Vol. 12, no 1, p. 44-73. DOI: 10.1038/nprot.2016.154. [DB: Science Citation Index Expanded (Web of Science), Scopus, Animal Behavior Abstracts, Biotechnology Research Abstracts, Embase, MEDLINE] [IF: 12.423; AIF: 3.396; Q1 (2017 InCities JCR SCIE)]
2 Engblom, Camilla; Pfirschke, Christina; Žilionis, Rapolas. Osteoblasts remotely supply lung tumors with cancer-promoting SiglecF(high) neutrophils // Science. Washington : American Association for the Advancement of Science. ISSN 0036-8075. eISSN 1095-9203. 2017, Vol. 358, Iss. 6367, art. no. eaal5081, [15 p.]. DOI: 10.1126/science.aal5081. [DB: Embase, Biobase, Scopus, Science Citation Index Expanded (Web of Science)] [IF: 41.058; AIF: 5.110; Q1 (2017 InCities JCR SCIE)]

2016
1 Derr, Alan; Yang, Chaoxing; Žilionis, Rapolas; Sergushichev, Alexey; Blodgett, David M.; Redick, Sambra; Bortell, Rita; Luban, Jeremy; Harlan, David M.; Kadener, Sebastian; Greiner, Dale L.; Klein, Allon; Artyomov, Maxim N.; Garber, Manuel. End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data // Genome research. Cold Spring Harbor, NY : Cold Spring Harbor Laboratory Press. ISSN 1088-9051. eISSN 1549-5469. 2016, Vol. 26, Iss. 10, p. 1397-1410. DOI: 10.1101/gr.207902.116. [DB: MEDLINE, Current Contents, BIOSIS Previews, PubMed, Academic OneFile, Scopus, Biobase, Current Abstracts, CABI Abstracts Databases, Science Citation Index Expanded (Web of Science)] [IF: 11.922; AIF: 3.929; Q1 (2016 InCities JCR SCIE)]
2 Galinis, Robertas; Stonytė, Greta; Kiseliovas, Vaidotas; Žilionis, Rapolas; Studer, Sabine; Hilvert, Donald; Janulaitis, Arvydas Eugenijus; Mažutis, Linas. DNA nanoparticles for improved protein synthesis in vitro // Angewandte chemie international edition. Weinheim : Wiley-VCH. ISSN 1433-7851. eISSN 1521-3773. 2016, Vol. 55, p. 3120-3123. DOI: 10.1002/anie.201511809. [DB: Science Citation Index Expanded (Web of Science), Scopus, Chemical abstracts] [IF: 11.994; AIF: 5.649; Q1 (2016 InCities JCR SCIE)]